22 Feb 2023
 | 22 Feb 2023

AgriCarbon-EO: v1.0.1: Large Scale and High Resolution Simulation of Carbon Fluxes by Assimilation of Sentinel-2 and Landsat-8 Reflectances using a Bayesian approach

Taeken Wijmer, Ahmad Al Bitar, Ludovic Arnaud, Rémy Fieuzal, and Eric Ceschia

Abstract. Soil carbon storage is a well identified climate change mitigation solution. The extensive in-situ monitoring of the soil carbon storage in cropland for agricultural policy and offset carbon markets is prohibitive, especially at intra-field scale. For this reason, comprehensive Monitoring, Reporting and Verification (MRV) of soil carbon and its explanatory variables at large scale needs to rely on remote sensing and modelling tools that provide the spatio-temporal dynamics of the carbon budget and it’s components at high resolution with associated uncertainties. In this paper, we present AgriCarbon-EO v1.0: an end-to-end processing chain that enables the estimation of carbon budget components of major crops and cover crops at intra-field resolution (10 m) and large scale (over 110×110 km) by assimilating remote sensing data in physically-based radiative transfert and agronomic models. The data assimilation in AgriCarbon-EO is based on a novel Bayesian approach that combines Normalised Importance Sampling (NIS) and Look-Up Table (LUT) generation. This approach propagates the 10 m uncertainties across the processing chain from the reflectances to the output variables. The chain considers as input a land cover map, multi-spectral reflectance maps from the Sentinel-2 and Landsat-8 satellites, and daily weather forcing. The PROSAIL radiative transfer model is inversed in a first step to obtain Green Leaf Area Index (GLAI). The GLAI  time series are then assimilated into the SAFYE-CO2 crop model taking into consideration their uncertainty. The chain is applied over winter wheat in the south-west of France during the cropping seasons 2017 and 2019. We compare the results against the net ecosystem exchange measured at the FR-AUR ICOS site (RMSE = 1.69 - 2.4 gC m−2 , R2 = 0.88 - 0.88), biomass (RMSE = 250 g m−2 , R2 = 0.9), and combine harvester yield maps. We quantify the difference between pixel and field and pixel scale simulations of biomass (bias = -47 g m−2 , -39 % variability), and the impact of the number of remote sensing acquisitions on the outputs (-66 % of mean uncertainty of biomass). Finally, we conduct a coherency analysis at regional scale to test the consistency of the observed patterns with soil texture, altitude and exposition variability. Results show higher biomass for higher clay soils and earlier emergence and senescence for south western exposition.

Taeken Wijmer et al.

Status: final response (author comments only)

Comment types: AC – author | RC – referee | CC – community | EC – editor | CEC – chief editor | : Report abuse
  • RC1: 'Comment on egusphere-2023-48', Anonymous Referee #1, 06 Mar 2023
    • AC1: 'Comment on egusphere-2023-48', Taeken Wijmer, 30 Mar 2023
    • AC3: 'Comment on egusphere-2023-48', Ahmad Al Bitar, 04 Jul 2023
  • AC1: 'Comment on egusphere-2023-48', Taeken Wijmer, 30 Mar 2023
  • CEC1: 'Comment on egusphere-2023-48', Juan Antonio Añel, 06 Apr 2023
    • CC1: 'Reply on CEC1', Ahmad Al Bitar, 07 Apr 2023
      • CEC2: 'Reply on CC1', Juan Antonio Añel, 09 Apr 2023
        • AC4: 'Reply on CEC2', Ahmad Al Bitar, 04 Jul 2023
  • RC2: 'Comment on egusphere-2023-48', Anonymous Referee #2, 21 Jun 2023
    • AC2: 'Comment on egusphere-2023-48', Ahmad Al Bitar, 04 Jul 2023
  • AC2: 'Comment on egusphere-2023-48', Ahmad Al Bitar, 04 Jul 2023
  • AC3: 'Comment on egusphere-2023-48', Ahmad Al Bitar, 04 Jul 2023

Taeken Wijmer et al.

Data sets

AgriCarbon-EO Winter wheat Net Ecosystem Exchange and Biomass over South-west France at 10 m resolution Taeken Wijmer, Ahmad Al Bitar, and Eric Ceschia

Taeken Wijmer et al.


Total article views: 1,057 (including HTML, PDF, and XML)
HTML PDF XML Total BibTeX EndNote
730 301 26 1,057 6 7
  • HTML: 730
  • PDF: 301
  • XML: 26
  • Total: 1,057
  • BibTeX: 6
  • EndNote: 7
Views and downloads (calculated since 22 Feb 2023)
Cumulative views and downloads (calculated since 22 Feb 2023)

Viewed (geographical distribution)

Total article views: 1,010 (including HTML, PDF, and XML) Thereof 1,010 with geography defined and 0 with unknown origin.
Country # Views %
  • 1
Latest update: 01 Oct 2023
Short summary
Quantification of Carbon fluxes of crops is an essential brick for the construction of a Monitoring, Reporting and Verification approach. We developed an end-to-end platform (AgriCarbon-EO) that assimilates through an efficient Bayesian approach, high resolution (10 m) optical remote sensing data into radiative transfer and crop modelling at regional scale (100 x 100 km). Large-scale estimates of carbon flux are validated against in-situ flux towers, yield maps, and analysed at regional scale.