Preprints
https://doi.org/10.5194/egusphere-2026-59
https://doi.org/10.5194/egusphere-2026-59
28 Jan 2026
 | 28 Jan 2026
Status: this preprint is open for discussion and under review for Atmospheric Chemistry and Physics (ACP).

Tracing biological, human, and inorganic sources of coarse aerosols via single-particle fluorescence and optical morphology

Aiden Jönsson, Jinglan Fu, Gabriel Pereira Freitas, Ian Crawford, Pavla Dagsson-Waldhauserová, Radovan Krejci, Yutaka Tobo, Karl Espen Yttri, and Paul Zieger

Abstract. Coarse-mode aerosol particles influence the environment, climate, and human health in diverse ways depending on their type. While mineral dust and sea spray aerosol (SSA) dominate this size range, rarer biological particles can have outsized impacts, for example by initiating ice formation at relatively warm temperatures. Hence, accurate, type-specific characterization of coarse-mode aerosol is essential for understanding their roles in climate and the environment. Using laboratory measurements of single-particle ultraviolet light-induced fluorescence (UV-LIF) spectroscopy and morphology, we provide a new reference dataset for coarse-mode aerosols from common sources, including pollen, dust, bacteria, and microplastics. Comparisons with previously published datasets reveal consistent source-dependent fluorescence features, but also highlights similarities between biological and non-biological particles that can bias classifications based on fluorescence alone.

We present an improved machine learning-based classification algorithm that integrates fluorescence and morphology using laboratory data for training, and evaluate its performance using observations made at Zeppelin Observatory, Svalbard. We apply domain adaptation using field data to improve the identification of combustion-sourced particles, and to better distinguish dust from SSA. The new algorithm reproduces the previously published annual bioaerosol cycle, yields higher concentrations than a fluorescence-only approach, and maintains comparable correlations with biological and combustion tracers. This open-source algorithm provides a basis for quantifying bioaerosols across diverse environments, can revise bioaerosol estimates in previously analyzed observations, and can be refined as additional characterization data become available.

Competing interests: At least one of the (co-)authors is a member of the editorial board of Atmospheric Chemistry and Physics.

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Aiden Jönsson, Jinglan Fu, Gabriel Pereira Freitas, Ian Crawford, Pavla Dagsson-Waldhauserová, Radovan Krejci, Yutaka Tobo, Karl Espen Yttri, and Paul Zieger

Status: open (until 11 Mar 2026)

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Aiden Jönsson, Jinglan Fu, Gabriel Pereira Freitas, Ian Crawford, Pavla Dagsson-Waldhauserová, Radovan Krejci, Yutaka Tobo, Karl Espen Yttri, and Paul Zieger

Model code and software

TRUFFLE: Trained Recognition of Unique Fluorescence- & Form-based Labels for Environmental aerosols Aiden Jönsson https://github.com/aidenrobert/truffle/

Aiden Jönsson, Jinglan Fu, Gabriel Pereira Freitas, Ian Crawford, Pavla Dagsson-Waldhauserová, Radovan Krejci, Yutaka Tobo, Karl Espen Yttri, and Paul Zieger
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Latest update: 28 Jan 2026
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Short summary
Coarse-mode aerosols, like dust and bioaerosols, play important roles in environmental and climate processes. We measured fluorescence and morphological properties of key coarse-mode particle types, compared them with previous characterizations, and trained machine learning models with these data to classify unknown particles. This algorithm improves bioaerosol identification and successfully reproduces the annual bioaerosol cycle previously identified in a year of observations from Svalbard.
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