Preprints
https://doi.org/10.5194/egusphere-2025-397
https://doi.org/10.5194/egusphere-2025-397
21 Mar 2025
 | 21 Mar 2025

Spatially varying parameters improve carbon cycle modeling in the Amazon rainforest with ORCHIDEE r8849

Lei Zhu, Philippe Ciais, Yitong Yao, Daniel Goll, Sebastiaan Luyssaert, Isabel Martínez Cano, Arthur Fendrich, Laurent Li, Hui Yang, Sassan Saatchi, and Wei Li

Abstract. Uncertainty in the dynamics of Amazon rainforest poses a critical challenge for accurately modeling the global carbon cycle. Current dynamic global vegetation models (DGVMs), which use one or two plant functional types for tropical rainforests, fail to capture observed biomass and mortality gradients in this region, raising concerns about their ability to predict forest responses to global change drivers. Here we assess the importance of spatially varying parameters to resolve ecosystems spatial heterogeneity in the ORCHIDEE (ORganizing Carbon and Hydrology in Dynamic EcosystEms) DGVM. Using satellite observations of gross primary productivity (GPP), tree aboveground biomass (AGB) and biomass mortality rates, we optimized two key parameters: the alpha self-thinning (α), which controls tree mortality induced by light competition, and the nitrogen use efficiency of photosynthesis (η), which regulates GPP. The model incorporating spatially optimized α and η parameters successfully reproduces the spatial variability of AGB (R2=0.82), GPP (R2=0.79), and biomass mortality rates (R2=0.73) when compared to remote sensing observations in intact Amazon rainforests, whereas the model using spatially constant parameters has R2 values lower than 0.04 for all observations. Furthermore, the relationships between the optimized parameters and ecosystem traits, as well as climate variables were evaluated using random forest regression. We found that wood density emerges as the most important determinant of α, which are in line with existing theory, while water deficit conditions significantly impact η. This study presents an efficient and accurate approach to enhancing the simulation of Amazonian carbon pools and fluxes in DGVMs by assimilating existing observational data, offering valuable insights for future model development and parameterization.

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Journal article(s) based on this preprint

11 Aug 2025
Spatially varying parameters improve carbon cycle modeling in the Amazon rainforest with ORCHIDEE r8849
Lei Zhu, Philippe Ciais, Yitong Yao, Daniel Goll, Sebastiaan Luyssaert, Isabel Martínez Cano, Arthur Fendrich, Laurent Li, Hui Yang, Sassan Saatchi, Ricardo Dalagnol, and Wei Li
Geosci. Model Dev., 18, 4915–4933, https://doi.org/10.5194/gmd-18-4915-2025,https://doi.org/10.5194/gmd-18-4915-2025, 2025
Short summary
Lei Zhu, Philippe Ciais, Yitong Yao, Daniel Goll, Sebastiaan Luyssaert, Isabel Martínez Cano, Arthur Fendrich, Laurent Li, Hui Yang, Sassan Saatchi, and Wei Li

Interactive discussion

Status: closed

Comment types: AC – author | RC – referee | CC – community | EC – editor | CEC – chief editor | : Report abuse
  • CEC1: 'Comment on egusphere-2025-397 - No compliance with the policy of the journal', Juan Antonio Añel, 21 Mar 2025
    • AC1: 'Reply on CEC1', Lei Zhu, 22 Mar 2025
      • CEC2: 'Reply on AC1', Juan Antonio Añel, 22 Mar 2025
        • AC2: 'Reply on CEC2', Lei Zhu, 25 Mar 2025
  • RC1: 'Comment on egusphere-2025-397', Anonymous Referee #1, 19 Apr 2025
    • AC3: 'Reply on RC1', Lei Zhu, 04 Jun 2025
  • RC2: 'Comment on egusphere-2025-397', Anonymous Referee #2, 29 Apr 2025
    • AC4: 'Reply on RC2', Lei Zhu, 04 Jun 2025

Interactive discussion

Status: closed

Comment types: AC – author | RC – referee | CC – community | EC – editor | CEC – chief editor | : Report abuse
  • CEC1: 'Comment on egusphere-2025-397 - No compliance with the policy of the journal', Juan Antonio Añel, 21 Mar 2025
    • AC1: 'Reply on CEC1', Lei Zhu, 22 Mar 2025
      • CEC2: 'Reply on AC1', Juan Antonio Añel, 22 Mar 2025
        • AC2: 'Reply on CEC2', Lei Zhu, 25 Mar 2025
  • RC1: 'Comment on egusphere-2025-397', Anonymous Referee #1, 19 Apr 2025
    • AC3: 'Reply on RC1', Lei Zhu, 04 Jun 2025
  • RC2: 'Comment on egusphere-2025-397', Anonymous Referee #2, 29 Apr 2025
    • AC4: 'Reply on RC2', Lei Zhu, 04 Jun 2025

Peer review completion

AR: Author's response | RR: Referee report | ED: Editor decision | EF: Editorial file upload
AR by Lei Zhu on behalf of the Authors (04 Jun 2025)  Author's response   Author's tracked changes   Manuscript 
ED: Publish subject to technical corrections (09 Jun 2025) by Carlos Sierra
AR by Lei Zhu on behalf of the Authors (09 Jun 2025)  Manuscript 

Journal article(s) based on this preprint

11 Aug 2025
Spatially varying parameters improve carbon cycle modeling in the Amazon rainforest with ORCHIDEE r8849
Lei Zhu, Philippe Ciais, Yitong Yao, Daniel Goll, Sebastiaan Luyssaert, Isabel Martínez Cano, Arthur Fendrich, Laurent Li, Hui Yang, Sassan Saatchi, Ricardo Dalagnol, and Wei Li
Geosci. Model Dev., 18, 4915–4933, https://doi.org/10.5194/gmd-18-4915-2025,https://doi.org/10.5194/gmd-18-4915-2025, 2025
Short summary
Lei Zhu, Philippe Ciais, Yitong Yao, Daniel Goll, Sebastiaan Luyssaert, Isabel Martínez Cano, Arthur Fendrich, Laurent Li, Hui Yang, Sassan Saatchi, and Wei Li

Data sets

Source code and data for 'Spatially varying parameters improve carbon cycle modeling in the Amazon rainforest with ORCHIDEE r8849' Lei Zhu https://doi.org/10.5281/zenodo.15023110

Lei Zhu, Philippe Ciais, Yitong Yao, Daniel Goll, Sebastiaan Luyssaert, Isabel Martínez Cano, Arthur Fendrich, Laurent Li, Hui Yang, Sassan Saatchi, and Wei Li

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Short summary
This study enhances the accuracy of modeling the carbon dynamics of Amazon rainforest by optimizing key model parameters based on satellite data. Using spatially varying parameters for tree mortality and photosynthesis, we improved predictions of biomass, productivity, and tree mortality. Our findings highlight the critical role of wood density and water availability in forest processes, offering insights to refine global carbon cycle models.
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