Preprints
https://doi.org/10.5194/egusphere-2025-2564
https://doi.org/10.5194/egusphere-2025-2564
26 Jun 2025
 | 26 Jun 2025
Status: this preprint is open for discussion and under review for Geoscientific Model Development (GMD).

VaPOrS v1.0.1: An automated model for estimating vapor pressure of organic compounds using SMILES notation

Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen

Abstract. Volatile organic compounds play a significant role in atmospheric chemistry, influencing air quality and climate change. Accurate prediction of their physical properties is essential for understanding their behavior. This paper introduces the VaPOrS (Vapor Pressure in Organics via SMILES) as a comprehensive tool designed to process SMILES notation of organic compounds, identify key functional groups, and calculate their saturation vapor pressure and enthalpy of vaporization at any specified temperature. While this first study focuses on applying the SIMPOL method for parameterization, VaPOrS is inherently adaptable to other structure-based parameterization approaches, such as group additivity and volatility basis set (VBS) methods by extracting substructure information from each string that is meaningful to property predictive techniques. It can also be extended to any thermodynamic property that relies on structural group-based parameterizations. In its current version, the tool automates the detection of 30 critical structural groups and has been validated against manually counted functional groups and experimental saturation vapor pressure data for a diverse set of compounds. The results demonstrate high accuracy, with the tool correctly identifying the same functional groups, followed by providing prompt saturation vapor pressure predictions according to the SIMPOL parameterization. The developed method can be integrated into large-scale simulation models targeting secondary aerosol formation and involving thousands of organic species at once. Thus, the developed tool offers a robust computational approach for research in atmospheric chemistry and environmental science, allowing to streamline the analysis of a large collection of organic compounds, aiding in the assessment of their climatic impacts.

Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this preprint. The responsibility to include appropriate place names lies with the authors.
Share
Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen

Status: open (until 21 Aug 2025)

Comment types: AC – author | RC – referee | CC – community | EC – editor | CEC – chief editor | : Report abuse
  • RC1: 'Comment on egusphere-2025-2564', Simon O'Meara, 15 Jul 2025 reply
Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen
Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen

Viewed

Total article views: 108 (including HTML, PDF, and XML)
HTML PDF XML Total BibTeX EndNote
87 12 9 108 7 11
  • HTML: 87
  • PDF: 12
  • XML: 9
  • Total: 108
  • BibTeX: 7
  • EndNote: 11
Views and downloads (calculated since 26 Jun 2025)
Cumulative views and downloads (calculated since 26 Jun 2025)

Viewed (geographical distribution)

Total article views: 111 (including HTML, PDF, and XML) Thereof 111 with geography defined and 0 with unknown origin.
Country # Views %
  • 1
1
 
 
 
 
Latest update: 15 Jul 2025
Download
Short summary
We developed a computer program that can read chemical formulas and identify key features in thousands of organic compounds. This helps scientists estimate how easily these compounds evaporate, which is important for understanding air pollution and climate. We tested the program using real-world data and found it to be highly accurate. Our work makes it faster and easier to study the behavior of many complex chemicals in the atmosphere.
Share