Preprints
https://doi.org/10.5194/egusphere-2025-2564
https://doi.org/10.5194/egusphere-2025-2564
26 Jun 2025
 | 26 Jun 2025

VaPOrS v1.0.1: An automated model for estimating vapor pressure of organic compounds using SMILES notation

Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen

Abstract. Volatile organic compounds play a significant role in atmospheric chemistry, influencing air quality and climate change. Accurate prediction of their physical properties is essential for understanding their behavior. This paper introduces the VaPOrS (Vapor Pressure in Organics via SMILES) as a comprehensive tool designed to process SMILES notation of organic compounds, identify key functional groups, and calculate their saturation vapor pressure and enthalpy of vaporization at any specified temperature. While this first study focuses on applying the SIMPOL method for parameterization, VaPOrS is inherently adaptable to other structure-based parameterization approaches, such as group additivity and volatility basis set (VBS) methods by extracting substructure information from each string that is meaningful to property predictive techniques. It can also be extended to any thermodynamic property that relies on structural group-based parameterizations. In its current version, the tool automates the detection of 30 critical structural groups and has been validated against manually counted functional groups and experimental saturation vapor pressure data for a diverse set of compounds. The results demonstrate high accuracy, with the tool correctly identifying the same functional groups, followed by providing prompt saturation vapor pressure predictions according to the SIMPOL parameterization. The developed method can be integrated into large-scale simulation models targeting secondary aerosol formation and involving thousands of organic species at once. Thus, the developed tool offers a robust computational approach for research in atmospheric chemistry and environmental science, allowing to streamline the analysis of a large collection of organic compounds, aiding in the assessment of their climatic impacts.

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Journal article(s) based on this preprint

28 Nov 2025
VaPOrS v1.0.1: an automated model for functional group detection and property prediction of organic compounds via SMILES notation
Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen
Geosci. Model Dev., 18, 9189–9217, https://doi.org/10.5194/gmd-18-9189-2025,https://doi.org/10.5194/gmd-18-9189-2025, 2025
Short summary
Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen

Interactive discussion

Status: closed

Comment types: AC – author | RC – referee | CC – community | EC – editor | CEC – chief editor | : Report abuse
  • RC1: 'Comment on egusphere-2025-2564', Simon O'Meara, 15 Jul 2025
    • AC1: 'Reply on RC1', Mojtaba Bezaatpour, 04 Aug 2025
      • RC2: 'Reply on AC1', Simon O'Meara, 12 Aug 2025
  • RC3: 'Comment on egusphere-2025-2564', Anonymous Referee #2, 04 Sep 2025
  • EC1: 'Comment on egusphere-2025-2564', Rolf Sander, 16 Oct 2025
  • EC2: 'Comment on egusphere-2025-2564', Rolf Sander, 16 Oct 2025

Interactive discussion

Status: closed

Comment types: AC – author | RC – referee | CC – community | EC – editor | CEC – chief editor | : Report abuse
  • RC1: 'Comment on egusphere-2025-2564', Simon O'Meara, 15 Jul 2025
    • AC1: 'Reply on RC1', Mojtaba Bezaatpour, 04 Aug 2025
      • RC2: 'Reply on AC1', Simon O'Meara, 12 Aug 2025
  • RC3: 'Comment on egusphere-2025-2564', Anonymous Referee #2, 04 Sep 2025
  • EC1: 'Comment on egusphere-2025-2564', Rolf Sander, 16 Oct 2025
  • EC2: 'Comment on egusphere-2025-2564', Rolf Sander, 16 Oct 2025

Peer review completion

AR – Author's response | RR – Referee report | ED – Editor decision | EF – Editorial file upload
AR by Mojtaba Bezaatpour on behalf of the Authors (04 Oct 2025)  Author's response   Author's tracked changes   Manuscript 
ED: Referee Nomination & Report Request started (08 Oct 2025) by Rolf Sander
RR by Anonymous Referee #2 (14 Oct 2025)
RR by Simon O'Meara (15 Oct 2025)
ED: Publish subject to minor revisions (review by editor) (15 Oct 2025) by Rolf Sander
AR by Mojtaba Bezaatpour on behalf of the Authors (21 Oct 2025)  Author's response   Author's tracked changes   Manuscript 
ED: Publish as is (26 Oct 2025) by Rolf Sander
AR by Mojtaba Bezaatpour on behalf of the Authors (01 Nov 2025)

Journal article(s) based on this preprint

28 Nov 2025
VaPOrS v1.0.1: an automated model for functional group detection and property prediction of organic compounds via SMILES notation
Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen
Geosci. Model Dev., 18, 9189–9217, https://doi.org/10.5194/gmd-18-9189-2025,https://doi.org/10.5194/gmd-18-9189-2025, 2025
Short summary
Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen
Mojtaba Bezaatpour, Miikka Dal Maso, and Matti Rissanen

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Short summary
We developed a computer program that can read chemical formulas and identify key features in thousands of organic compounds. This helps scientists estimate how easily these compounds evaporate, which is important for understanding air pollution and climate. We tested the program using real-world data and found it to be highly accurate. Our work makes it faster and easier to study the behavior of many complex chemicals in the atmosphere.
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