Preprints
https://doi.org/10.5194/egusphere-2025-1183
https://doi.org/10.5194/egusphere-2025-1183
09 May 2025
 | 09 May 2025
Status: this preprint is open for discussion and under review for Geoscientific Model Development (GMD).

The SAPRC Atmospheric Chemical Mechanism Generation System (MechGen)

William P. L. Carter, Jia Jiang, Zhizhao Wang, and Kelley C. Barsanti

Abstract. MechGen is a software system designed to derive gas-phase reaction mechanisms for reactive organic compounds under atmospherically relevant conditions for use in chemical models and for data analysis and interpretation. It has been used to derive versions of the SAPRC mechanisms used in airshed models, with SAPRC-22 being the most recent. MechGen derives fully explicit mechanisms for many types of organic compounds and their oxidation products when they react in the atmosphere in the presence of oxides of nitrogen and other pollutants, and then uses these explicit mechanisms to derive reduced or lumped mechanisms more suitable for use in airshed models. This paper gives an overview of the system, describes the procedures it uses to generate explicit and reduced mechanisms, and presents several types of applications. The assignments and estimates used to derive individual chemical reactions and assign rate constants are discussed in a separate companion paper. The system is publicly accessible for generating explicit mechanisms for single compounds and viewing associated documentation using a web-based interface. A separate terminal login is available for deriving mechanisms for multiple compounds, multi-generation mechanisms, and portions of lumped mechanisms for airshed models, as well as for system programming and management. MechGen is designed to accommodate updates to the chemical estimates and assignments that it uses to reflect our evolving knowledge of and ability to estimate atmospheric reactions of organic compounds.

Publisher's note: Copernicus Publications remains neutral with regard to jurisdictional claims made in the text, published maps, institutional affiliations, or any other geographical representation in this preprint. The responsibility to include appropriate place names lies with the authors.
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William P. L. Carter, Jia Jiang, Zhizhao Wang, and Kelley C. Barsanti

Status: open (until 04 Jul 2025)

Comment types: AC – author | RC – referee | CC – community | EC – editor | CEC – chief editor | : Report abuse
William P. L. Carter, Jia Jiang, Zhizhao Wang, and Kelley C. Barsanti

Data sets

User Manual William P. L. Carter et al. https://github.com/SAPRC/MechGen/blob/master/docs/MechGenMan.pdf

William P. L. Carter, Jia Jiang, Zhizhao Wang, and Kelley C. Barsanti

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Short summary
The SAPRC Atmospheric Chemical Mechanism Generation System (MechGen) generates explicit chemical reaction mechanisms for organic compounds. MechGen has been used for decades in the development of the widely-used SAPRC mechanisms. This manuscript, detailing the software system, and a companion manuscript, detailing the chemical basis, represent the first complete documentation of MechGen. This manuscript includes examples and instructions for generating explicit and reduced mechanisms.
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