the Creative Commons Attribution 4.0 License.
the Creative Commons Attribution 4.0 License.
| 27 Feb 2024
A nonhydrostatic formulation for MPAS-Ocean
Abstract. The Model for Prediction Across Scales-Ocean (MPAS-Ocean) is an open-source, global ocean model and is one component of a family of climate models within the MPAS framework, including atmosphere, sea-ice, and land-ice models. In this work, a new formulation for the ocean model is presented that solves the nonhydrostatic, incompressible Boussinesq equations on an unstructured, staggered, z-level grid. The introduction of this nonhydrostatic capability is necessary for the resolution of internal wave dynamics and large eddy simulations. Compared to the standard, hydrostatic formulation, a nonhydrostatic pressure solver and a vertical momentum equation are added, where the PETSc (Portable Extensible Toolkit for Scientific Computation) library is used for the inversion of a large sparse system for the nonhydrostatic pressure. Numerical results on a stratified seiche, internal solitary wave, overflow and lock-exchange test cases are presented, and the parallel efficiency of the code is evaluated using up to 128 processors.
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Interactive discussion
Status: closed
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CEC1: 'Comment on egusphere-2024-472', Juan Antonio Añel, 27 Mar 2024
Dear authors,
Unfortunately, after checking your manuscript, it has come to our attention that it does not comply with our "Code and Data Policy".
https://www.geoscientific-model-development.net/policies/code_and_data_policy.html
You have archived your code on GitHub. However, GitHub is not a suitable repository for scientific publication. GitHub itself instructs authors to use other alternatives for long-term archival and publishing, such as Zenodo. Therefore, please, publish your code in one of the appropriate repositories, and reply to this comment with the relevant information (link and DOI) as soon as possible, as it should be available before the Discussions stage. Also, please, include the relevant primary input/output data.ÂIn this way, if you do not fix this problem, we will have to reject your manuscript for publication in our journal. I should note that, actually, your manuscript should not have been accepted in Discussions, given this lack of compliance with our policy. Therefore, the current situation with your manuscript is irregular.
Also, you must include in a potentially reviewed version of your manuscript the modified 'Code Availability' and 'Data Availability' sections, the DOI of the code (and another DOI for the dataset if necessary).Â
Juan A. Añel
Geosci. Model Dev. Executive Editor  ÂCitation: https://doi.org/10.5194/egusphere-2024-472-CEC1 -
AC1: 'Reply on CEC1', Sara Calandrini, 29 Apr 2024
The code has been published on Zenodo. Here is the link:
https://zenodo.org/records/11087164
and the DOI:
10.5281/zenodo.11087164
We are working on modifying the 'Code Availability' and 'Data Availability' sections of the manuscript. How would I submit the modified version?Citation: https://doi.org/10.5194/egusphere-2024-472-AC1 -
CEC2: 'Reply on AC1', Juan Antonio Añel, 30 Apr 2024
Dear authors,
Thanks for addressing the issue of the publication of the code.
You only need to include the modified manuscript with the new information in the code section in case that the Topical Editor request from you a reviewed version of your manuscript, after comments from reviewers, or if your manuscript is accepted for publication.
Regards,
Juan A. Añel
Geosci. Model Dev. Executive Editor
Citation: https://doi.org/10.5194/egusphere-2024-472-CEC2
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CEC2: 'Reply on AC1', Juan Antonio Añel, 30 Apr 2024
-
AC1: 'Reply on CEC1', Sara Calandrini, 29 Apr 2024
-
AC2: 'Comment on egusphere-2024-472', Sara Calandrini, 03 Sep 2024
The authors are withdrawing this paper from GMD.
Citation: https://doi.org/10.5194/egusphere-2024-472-AC2
Interactive discussion
Status: closed
-
CEC1: 'Comment on egusphere-2024-472', Juan Antonio Añel, 27 Mar 2024
Dear authors,
Unfortunately, after checking your manuscript, it has come to our attention that it does not comply with our "Code and Data Policy".
https://www.geoscientific-model-development.net/policies/code_and_data_policy.html
You have archived your code on GitHub. However, GitHub is not a suitable repository for scientific publication. GitHub itself instructs authors to use other alternatives for long-term archival and publishing, such as Zenodo. Therefore, please, publish your code in one of the appropriate repositories, and reply to this comment with the relevant information (link and DOI) as soon as possible, as it should be available before the Discussions stage. Also, please, include the relevant primary input/output data.ÂIn this way, if you do not fix this problem, we will have to reject your manuscript for publication in our journal. I should note that, actually, your manuscript should not have been accepted in Discussions, given this lack of compliance with our policy. Therefore, the current situation with your manuscript is irregular.
Also, you must include in a potentially reviewed version of your manuscript the modified 'Code Availability' and 'Data Availability' sections, the DOI of the code (and another DOI for the dataset if necessary).Â
Juan A. Añel
Geosci. Model Dev. Executive Editor  ÂCitation: https://doi.org/10.5194/egusphere-2024-472-CEC1 -
AC1: 'Reply on CEC1', Sara Calandrini, 29 Apr 2024
The code has been published on Zenodo. Here is the link:
https://zenodo.org/records/11087164
and the DOI:
10.5281/zenodo.11087164
We are working on modifying the 'Code Availability' and 'Data Availability' sections of the manuscript. How would I submit the modified version?Citation: https://doi.org/10.5194/egusphere-2024-472-AC1 -
CEC2: 'Reply on AC1', Juan Antonio Añel, 30 Apr 2024
Dear authors,
Thanks for addressing the issue of the publication of the code.
You only need to include the modified manuscript with the new information in the code section in case that the Topical Editor request from you a reviewed version of your manuscript, after comments from reviewers, or if your manuscript is accepted for publication.
Regards,
Juan A. Añel
Geosci. Model Dev. Executive Editor
Citation: https://doi.org/10.5194/egusphere-2024-472-CEC2
-
CEC2: 'Reply on AC1', Juan Antonio Añel, 30 Apr 2024
-
AC1: 'Reply on CEC1', Sara Calandrini, 29 Apr 2024
-
AC2: 'Comment on egusphere-2024-472', Sara Calandrini, 03 Sep 2024
The authors are withdrawing this paper from GMD.
Citation: https://doi.org/10.5194/egusphere-2024-472-AC2
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