Preprints
https://doi.org/10.5194/egusphere-2026-6692
https://doi.org/10.5194/egusphere-2026-6692
12 Nov 2026
 | 12 Nov 2026
Status: this preprint is open for discussion and under review for Biogeosciences (BG).

Predicting soil-atmosphere CH4 and CO2 fluxes across several drained peatland forests with JSBACH-HIMMELI

Ellinoora Ekman, Xuefei Li, Antti Leppänen, Tuula Aalto, Jani Anttila, Jyrki Jauhiainen, Raija Laiho, Annalea Lohila, Tiina Markkanen, Kari Minkkinen, Raisa Mäkipää, Paavo Ojanen, Mikko Peltoniemi, Anuliina Putkinen, and Maarit Raivonen

Abstract. Drainage and other land-use practices, including forestry, substantially influence soil carbon dynamics and associated greenhouse gas (GHG) exchange between boreal peatland soils and atmosphere. Besides the land-use, several site-specific environmental factors, such as water table level (WTL), soil temperature and vegetation regulate the peatland soil GHG balance. It is important to understand the interactions among these co-existing factors at site scale to improve estimates of soil GHG exchange at larger (e.g. regional) spatial scales. Process-based models are useful tools to make large scale estimations, but knowledge about how well the models can capture the variation among drained peatlands, and thus accurately simulate the soil GHG fluxes, are lacking. We simulated key environmental variables (water table level i.e. WTL and soil temperature) and soil–atmosphere methane (CH4) and CO2 (heterotrophic respiration) fluxes at six Finnish forestry-drained peatlands with a process-based JSBACH-HIMMELI model. Specifically, our focus was on evaluating the model performance and identifying the sources of uncertainty across multiple sites by using measurement data over several years from each site. The model predicted key environmental variables adequately well at each study site. In addition, we found that the there was more between-site variation in the prediction accuracy with the simulated CH4 fluxes (NMRSE 1.02–9.25) than with the simulated CO2 fluxes (NMRSE 0.62–1.24). Our study highlights WTL as the primary source of uncertainty in simulating the CH4 fluxes. The sites characterized by consistently deep WTL exhibited substantially better agreement between the model and measurement with the soil–atmosphere CH4 fluxes (RMSE 0.69–1.02 nmol m-2 s-1), than sites characterized by higher WTL (RMSE 1.04–9.70 nmol m-2 s-1). These discrepancies at high-WTL sites were associated with high anaerobic respiration peaks, which were enhanced by relatively thick modelled acrotelm (i.e. fast decomposing topsoil layer). Our results demonstrate that CH4 parameterization has only a minor influence on modelled CH4 fluxes, compared to WTL, but can nevertheless improve prediction accuracy, especially at sites characterized by high WTL.

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Ellinoora Ekman, Xuefei Li, Antti Leppänen, Tuula Aalto, Jani Anttila, Jyrki Jauhiainen, Raija Laiho, Annalea Lohila, Tiina Markkanen, Kari Minkkinen, Raisa Mäkipää, Paavo Ojanen, Mikko Peltoniemi, Anuliina Putkinen, and Maarit Raivonen

Status: open (until 24 Dec 2026)

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Ellinoora Ekman, Xuefei Li, Antti Leppänen, Tuula Aalto, Jani Anttila, Jyrki Jauhiainen, Raija Laiho, Annalea Lohila, Tiina Markkanen, Kari Minkkinen, Raisa Mäkipää, Paavo Ojanen, Mikko Peltoniemi, Anuliina Putkinen, and Maarit Raivonen
Ellinoora Ekman, Xuefei Li, Antti Leppänen, Tuula Aalto, Jani Anttila, Jyrki Jauhiainen, Raija Laiho, Annalea Lohila, Tiina Markkanen, Kari Minkkinen, Raisa Mäkipää, Paavo Ojanen, Mikko Peltoniemi, Anuliina Putkinen, and Maarit Raivonen
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Short summary
We simulated soil methane and carbon dioxide fluxes with a process-based model across several forestry-drained peatland sites. We found that model prediction accuracy varied among the sites, particularly for methane fluxes. This uncertainty was mainly explained by the water table level and soil carbon pool simulation. These findings highlight the importance of accurately simulating these factors and representing the specific characteristics of drained peatland soils to improve model estimates.
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