Preprints
https://doi.org/10.64898/2026.03.12.711040
https://doi.org/10.64898/2026.03.12.711040
02 Apr 2026
 | 02 Apr 2026
Status: this preprint is open for discussion and under review for Biogeosciences (BG).

Testing the diffusion limitation hypothesis for declining methane uptake in forest soils

Victor Edmonds

Abstract. Upland forest soils oxidize 22–38 Tg CH₄ yr⁻¹, roughly 5 % of the total atmospheric methane sink. A recent study documented a 53–89 % reduction at two long-term ecological research networks in the northeastern United States and attributed it to increased precipitation via diffusion limitation. We tested five predictions of that hypothesis against 27 years of chamber flux data from the Baltimore Ecosystem Study (BES, 1998–2025; n = 9,359) and 14 years from the Hubbard Brook Experimental Forest (HBR, 2002–2015).

Four predictions were not supported. At the individual-measurement scale, neither monthly precipitation nor direct soil moisture explained more than 1 % of CH₄ flux variance (R² = 0.0008 and 0.0055). While precipitation emerged as a significant interannual predictor when data were aggregated to annual-site means (β = 0.249, p = 0.002), it did not eliminate the residual multi-decadal decline (βyear = 0.211, p = 0.007). No seasonal moisture–flux structure matched diffusion predictions. Urban and rural BES forests diverged despite sharing a regional precipitation regime (Year×LandUse interaction, p = 0.007), and a residual temporal trend persisted after controlling for moisture, temperature, and spatial pseudoreplication (p = 0.002). A structural breakpoint at 2002 (BES) and a putative shift at 2011 (HBR) aligned with atmospheric deposition trends rather than precipitation. A fifth test, the Hubbard Brook calcium amendment, yielded a null result that does not discriminate between mechanisms but constrains methanotrophic recovery potential.

These results suggest that precipitation-driven diffusion limitation does not adequately account for the multi-decadal loss of CH₄ uptake at these sites and point toward chronic biological degradation, potentially through nitrogen-mediated inhibition of high-affinity methanotrophy compounded by structural changes from invasive earthworm activity.

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Victor Edmonds

Status: open (until 14 May 2026)

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Victor Edmonds

Data sets

Analysis code for "Evidence for Biological Control of the Declining Forest Methane Sink" Victor Edmonds https://doi.org/10.5281/zenodo.18944403

Victor Edmonds

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Short summary
Forest soils contain bacteria that consume methane (a powerful greenhouse gas) before it reaches the atmosphere. Over recent decades, this natural filter has weakened dramatically. The prevailing explanation points to increasing rainfall, but our analysis of 27 years of measurements shows that rainfall does not account for the decline. Instead, the timing and pattern of losses suggest the bacteria themselves are being harmed.
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