Preprints
https://doi.org/10.5194/egusphere-2025-4432
https://doi.org/10.5194/egusphere-2025-4432
29 Sep 2025
 | 29 Sep 2025
Status: this preprint is open for discussion and under review for Biogeosciences (BG).

Modelling sun-induced chlorophyll fluorescence (SIF) in evergreen conifer forests with a terrestrial biosphere model

Tea Thum, Javier Pacheco-Labrador, Mika Aurela, Alan Barr, Marika Honkanen, Bruce Johnson, Hannakaisa Lindqvist, Troy Magney, Mirco Migliavacca, Zoe Amie Pierrat, Tristan Quaife, Jochen Stutz, and Sönke Zaehle

Abstract. Solar-induced chlorophyll fluorescence (SIF) is a small light signal emitted during the initial steps of photosynthesis and can be observed across scales (from photosystem level to satellites). To be able to model SIF, we need to understand the mechanistic processes (including both physical and biological) leading to the observed SIF signal. In this work, we implemented a representation of SIF emission and transmission processes into the terrestrial biosphere model QUINCY ('QUantifying Interactions between terrestrial Nutrient CYcles and the climate system'). We tested the model across three different boreal coniferous forests located in North America and Europe that have eddy covariance derived CO2 fluxes and tower-based SIF observations. We find that alternative SIF radiative transfer approaches (one based on mSCOPE, one on two-stream radiative transfer model L2SM, and one empirically based) overestimate the SIF signal, but show no large differences in the timing of their seasonal and diurnal predictions. The two-stream radiative transfer model approach, L2SM, provided stable performance while being comparatively computationally efficient. We find that our parameterization for sustained non-photochemical quenching is important for successfully simulating the timing of the SIF seasonal cycle. However, our parameterization did not work equally well across all three sites, likely because of different temperature regimes at the sites. We further evaluated the potential of remote sensing -based SIF from TROPOMI (the TROPOspheric Monitoring Instrument) to provide accurate information on SIF and found that it can potentially be used in model development. This study illustrates the usefulness of observations at different spatial scales and the linkages between SIF and GPP and their seasonal development at three different evergreen forest sites.

Competing interests: At least one of the (co-)authors is a member of the editorial board of Biogeosciences.

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Tea Thum, Javier Pacheco-Labrador, Mika Aurela, Alan Barr, Marika Honkanen, Bruce Johnson, Hannakaisa Lindqvist, Troy Magney, Mirco Migliavacca, Zoe Amie Pierrat, Tristan Quaife, Jochen Stutz, and Sönke Zaehle

Status: open (until 10 Nov 2025)

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Tea Thum, Javier Pacheco-Labrador, Mika Aurela, Alan Barr, Marika Honkanen, Bruce Johnson, Hannakaisa Lindqvist, Troy Magney, Mirco Migliavacca, Zoe Amie Pierrat, Tristan Quaife, Jochen Stutz, and Sönke Zaehle
Tea Thum, Javier Pacheco-Labrador, Mika Aurela, Alan Barr, Marika Honkanen, Bruce Johnson, Hannakaisa Lindqvist, Troy Magney, Mirco Migliavacca, Zoe Amie Pierrat, Tristan Quaife, Jochen Stutz, and Sönke Zaehle

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Short summary
Solar-induced chlorophyll fluorescence (SIF) is an optical signal emitted by plants, connected to the biochemical status of the plants. Therefore it helps to unveil what happens inside plants and since it can be observed with remote sensing, it provides a global view of plant activity. We included SIF module in a terrestrial biosphere model and examined how to best describe movement of the SIF signal in the forest. Our work will help to model SIF in boreal coniferous forests.
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