Preprints
https://doi.org/10.5194/egusphere-2025-4196
https://doi.org/10.5194/egusphere-2025-4196
04 Sep 2025
 | 04 Sep 2025
Status: this preprint is open for discussion and under review for Geoscientific Model Development (GMD).

The BiogeochemicAl Model for Hypoxic and Benthic Influenced areas: BAMHBI v1.0

Marilaure Grégoire, Luc Vandenbulcke, Séverine Chevalier, Mathurin Choblet, Ilya Drozd, Jean-François Grailet, Evgeny Ivanov, Loïc Macé, Polina Verezemskaya, Haolin Yu, Lauranne Alaerts, Ny Riana Randresihaja, Victor Mangeleer, Guillaume Maertens de Noordhout, Arthur Capet, Catherine Meulders, Anne Mouchet, Guy Munhoven, and Karline Soetaert

Abstract. This paper describes the ocean BiogeochemicAl Model for Hypoxic and Benthic Influenced areas (BAMHBI). BAMHBI is a moderate complexity marine biogeochemical model that describes the cycling of carbon, nitrogen, phosphorus, silicon and oxygen through the marine foodweb. It involves 22 state variables, extends from bacteria up to mesozooplankton and includes three phytoplankton functional types (PFTs), two zooplankton size-classes, a microbial loop with several classes of detritic materials. Five optional modules are available allowing to extend the model with the explicit modelling of Chlorophyll a (Chla) in each PFT, benthic degradation, gelatinous dynamics, particles aggregation and the carbonate system. BAMHBI describes the degradation of organic matter according to oxygenation conditions using an approach similar to that used in the sediment to simulate early diagenesis. The model is particularly appropriate for modelling low oxygen environments and the generation of sulfidic waters. An optional benthic module solves the degradation of sedimentary organic matter and the benthic-pelagic fluxes of solutes using an efficient formulation based on meta-modelling.

This paper describes in details model formulations, implementation and coupling with the physics. BAMHBI’s code is written in Fortran and can be coupled with many hydrodynamical models. Two case studies of application of BAMHBI in the Black Sea are described. One describes the application of BAMHBI to simulate the biogeochemical dynamics of the northwestern shelf during the eutrophication period. In particular, the ability of BAMHBI to simulate the oxygen dynamics at seasonal and interannual scales is assessed with a focus on the simulation of bottom hypoxia. We highlight the results of the benthic modelling module and its ability to represent benthic-pelagic fluxes. The second case study compares the BAMHBI simulated Chla and oxygen dynamics in the deep sea with respect to biogeochemical Argo.

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Marilaure Grégoire, Luc Vandenbulcke, Séverine Chevalier, Mathurin Choblet, Ilya Drozd, Jean-François Grailet, Evgeny Ivanov, Loïc Macé, Polina Verezemskaya, Haolin Yu, Lauranne Alaerts, Ny Riana Randresihaja, Victor Mangeleer, Guillaume Maertens de Noordhout, Arthur Capet, Catherine Meulders, Anne Mouchet, Guy Munhoven, and Karline Soetaert

Status: open (until 30 Oct 2025)

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Marilaure Grégoire, Luc Vandenbulcke, Séverine Chevalier, Mathurin Choblet, Ilya Drozd, Jean-François Grailet, Evgeny Ivanov, Loïc Macé, Polina Verezemskaya, Haolin Yu, Lauranne Alaerts, Ny Riana Randresihaja, Victor Mangeleer, Guillaume Maertens de Noordhout, Arthur Capet, Catherine Meulders, Anne Mouchet, Guy Munhoven, and Karline Soetaert

Data sets

BiogeochemicAl Model for Hypoxic and Benthic Influenced areas (BAMHBI) v1.0.1 M. Grégoire https://zenodo.org/records/16964655

Model code and software

Model code M. Grégoire et al. https://gitlab.uliege.be/especes/mast/r-bamhbi

Marilaure Grégoire, Luc Vandenbulcke, Séverine Chevalier, Mathurin Choblet, Ilya Drozd, Jean-François Grailet, Evgeny Ivanov, Loïc Macé, Polina Verezemskaya, Haolin Yu, Lauranne Alaerts, Ny Riana Randresihaja, Victor Mangeleer, Guillaume Maertens de Noordhout, Arthur Capet, Catherine Meulders, Anne Mouchet, Guy Munhoven, and Karline Soetaert

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Short summary
This paper describes the ocean BiogeochemicAl Model for Hypoxic and Benthic Influenced areas (BAMHBI). BAMHBI is a moderate complexity marine biogeochemical model that describes the cycling of carbon, nitrogen, phosphorus, silicon and oxygen through the marine foodweb. BAMHBI is a stand-alone biogeochemical model that can be coupled to any hydrodynamical model and is particularly appropriate for modelling low oxygen environments and the generation of sulfidic waters.
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